PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9880_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 340aa    MW: 38422.9 Da    PI: 6.4537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9880_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31023.3e-32115217199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k ltpsdv+k++rlv+pk++ae++      +g+  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++++ 
  Neem_9880_f_1 115 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggdSGD--KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDIILFERHRTDSD 208
                    99***************************955444..6779************************************************9888999 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  Neem_9880_f_1 209 RLFISWRRR 217
                    9*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-42110219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-31111216IPR015300DNA-binding pseudobarrel domain
CDDcd100176.38E-30113207No hitNo description
PfamPF023623.0E-29115217IPR003340B3 DNA binding domain
PROSITE profilePS5086314.41115218IPR003340B3 DNA binding domain
SMARTSM010191.2E-26115218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSINHFSTDL QEGPWWQQRQ QEMETTTQNA SSSSKQQQTI PPNQQQFWPS FHQHQQFYHQ  60
HQLWLGSYNS SHPTLSFNRN QEDNNTTTDQ HEVDDQTVTA SRELQETDLE KEPMFEKPLT  120
PSDVGKLNRL VIPKQHAEKY FPLGGDSGDK GLLLSFEDES GKCWRFRYSY WNSSQSYVLT  180
KGWSRYVKEK RLDAGDIILF ERHRTDSDRL FISWRRRGAA AQDGQNGGGG GGSGGVGGVG  240
WSRGLYSGHP YPVDVVQSHG VTVPYQPDCL HAGAVVQSQT TPVGSSKTLR LFGVNLECQL  300
DESEPSTPSD GSTMSSRGQA HQHYQLNYAQ RQNHMSVQEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-501102173113B3 domain-containing transcription factor NGA1
5os9_B1e-501102173113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275955.21e-116PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ26e-68Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A1Q3BY061e-122A0A1Q3BY06_CEPFO; B3 domain-containing protein
STRINGXP_006481711.11e-115(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.16e-59B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]