PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_977_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 256aa    MW: 28323.3 Da    PI: 7.8345
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_977_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20134168135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Neem_977_f_4 134 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 168
                   ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-19128180IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.89128164IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-13131169No hitNo description
Gene3DG3DSA:3.30.50.106.1E-17132168IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-12133165No hitNo description
PROSITE patternPS003440134159IPR000679Zinc finger, GATA-type
PfamPF003205.9E-18134168IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMHKCSSSQG NMVGPCSCGL FHSQSNSFSM LFSMPNHKSF DETDMYSFMS PSPSSSVDCT  60
LSLGTPSTRL SEDDEKRIRH DQRRSGSCVT NFCWDFLQTK NSPYAPQNHK TSRGSNSNTI  120
SNNSTNDPLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRA TAANANANGG  180
NASGVAEQHH GYYNNSWVHQ TQTQKLPCFS PAAFLFEFAF SSLDHGDDHD DGQQCCHRVK  240
KGDMLLRPEA LISSTE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022773992.11e-119GATA transcription factor 18-like
SwissprotQ8LC797e-53GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A1Q3AWD21e-109A0A1Q3AWD2_CEPFO; GATA domain-containing protein
STRINGEOX910851e-108(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-46GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]