PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9547_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 205aa    MW: 23146.6 Da    PI: 9.7613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9547_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154062123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C+ C++ F++   L  H+++H
  Neem_9547_f_2 40 YNCSFCKREFKSAQALGGHMNVH 62
                   89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-63766No hitNo description
Gene3DG3DSA:3.30.160.605.9E-43865IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.8E-74063IPR007087Zinc finger, C2H2
SMARTSM003550.00854062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1154067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEKTYMMVSS NKFKEKWDYE KFSFEGDHSS CGLTWPPKNY NCSFCKREFK SAQALGGHMN  60
VHRRDRARLR LLPPQVLEYR NPNPSFSSSS ISSPPSNKHL LPYTPKSLLS PIITSFSASS  120
SALSNDEKKR LLECPGEDAF STLPCGGITK KKMTRAAFGA GELKGYAKKC ELQSLKKRNV  180
ISLDLEMGLK DTKDVLDLEL RLGYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-123562229superman protein
2l1o_A3e-123562229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386218.24e-60zinc finger protein 11
TrEMBLA0A2H5QGT22e-55A0A2H5QGT2_CITUN; Uncharacterized protein
TrEMBLV4VV391e-58V4VV39_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006443884.12e-59(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.18e-17zinc finger protein 11