PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9305_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 497aa    MW: 55084.3 Da    PI: 9.7067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9305_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-053153123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C++C+k F r  nL+ H r H
  Neem_9305_f_1 31 FICEICNKGFQRDQNLQLHRRGH 53
                   89*******************88 PP

2zf-C2H211.90.0007107129123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H + +
  Neem_9305_f_1 107 WKCEKCSKKYAVQSDWKAHSKIC 129
                    58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-53053IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.99E-73053No hitNo description
PfamPF121715.9E-53153IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0223153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8453153IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
SMARTSM003559472102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-595128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.99E-7102127No hitNo description
SMARTSM00355140107127IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MKRKRNLPGT PDPDAEVIAL SPKSLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK  60
QRTNKEVRKK VYICPEKTCV HHDRSRALGD LTGIKKHYSR KHGEKKWKCE KCSKKYAVQS  120
DWKAHSKICG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARFTSLSS TNPNFRNEYG  180
TSNNPQAAGI PQYSSVFRPQ ASAGSEVVGN HSADGQKPRL PLWLDQANSH NLNPAGNIAG  240
NSNALLTPNS STGLPELAQM APMNMFGSLS QMQWFNKYPE ASFTGASLSM SSFPRGPKEE  300
EENKGYLSES ITSLYPNNQS QQQQQGPAHM SATALLQKAA QMGSTRSNSS LNTDTTGFGL  360
MSSSFNSYHQ DKNEMHKFFK QPNQSDHHQN LNELMNSFSS STPTSTMGAG PSSADLNSSS  420
LITNTKNLDH LLMPINGKQS HTVAGSNLNG GSSNNEADQR SLTRDFLGVG GESNRPFSQQ  480
ELAKFMNLSQ YSGHPHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-38103172372Zinc finger protein JACKDAW
5b3h_F3e-38103172372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15769KLKQRTNKEVRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982921.10.0PREDICTED: protein indeterminate-domain 9
TrEMBLA0A061GUF30.0A0A061GUF3_THECC; Nucleic acid binding protein, putative isoform 1
STRINGEOY330480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-103C2H2-like zinc finger protein