PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9298_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 167aa    MW: 18484.4 Da    PI: 10.3702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9298_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000954062123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ Fs+   L  H  +H
  Neem_9298_f_3 40 FECKTCNRQFSSFQALGGHRASH 62
                   89**********99999998887 PP

2zf-C2H2140.0001586108123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg++F     L  H+r+H
  Neem_9298_f_3  86 HECSICGQVFAVGQALGGHMRRH 108
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-123964IPR007087Zinc finger, C2H2
SuperFamilySSF576672.3E-939108No hitNo description
SMARTSM003550.24062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2424067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SMARTSM003550.05986108IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-986109IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6686108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRGFENGEI AERLAMANCL MLLSHGHQTK PVKRSATEVF ECKTCNRQFS SFQALGGHRA  60
SHKRPRLLAE KADGESKTLS LKPKLHECSI CGQVFAVGQA LGGHMRRHRV AINESLDSAA  120
AVVSNVPLLR RSNSSRRVFG LDLNLTPLEN DLEFLFGKMA PKVDLFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429010.12e-83zinc finger protein ZAT11
RefseqXP_006480743.12e-83zinc finger protein ZAT11
SwissprotQ9SLD42e-49ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV4STE55e-82V4STE5_9ROSI; Uncharacterized protein
STRINGXP_006480743.18e-83(Citrus sinensis)
STRINGXP_006429010.18e-83(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-52C2H2 family protein