PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9289_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 177aa    MW: 20147 Da    PI: 8.3545
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9289_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.24.5e-41191181100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+l+rkC ++C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++la+
  Neem_9289_f_1  19 SCAACKFLKRKCIPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMFELQHDLAV 114
                    6*********************************************************************************************99 PP

         DUF260  97 lkee 100
                    ++++
  Neem_9289_f_1 115 ARAR 118
                    9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.88818119IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-4019116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKWMYNEVMR SHEPRSSSSC AACKFLKRKC IPNCIFAPYF RSDEPKKFAK VHKVFGASNV  60
SKILTEVPEE QREDTVNSLA YEAEARLRDP VYGCIGAIAL LQRKMFELQH DLAVARARLA  120
RYTAANTCTV QNDYRVAMLP AFNDFVAGGG FENFGQNSSE FNRVGDMYDF SQVPYIQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435777.11e-101hypothetical protein CICLE_v10032862mg
RefseqXP_006486289.11e-101PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL81e-68LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A067FNC51e-101A0A067FNC5_CITSI; Uncharacterized protein
TrEMBLV4T7091e-101V4T709_9R
STRINGVIT_13s0067g01450.t015e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.18e-70LOB domain-containing protein 21