PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9263_f_13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 282aa    MW: 31438.1 Da    PI: 9.3555
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9263_f_13genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.52.3e-3233137199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  Neem_9263_f_13  33 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEqGK 127
                     89****************************66677899*************************************************66577788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  Neem_9263_f_13 128 DRLYIDWRRR 137
                     8999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-4226145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-3030134IPR015300DNA-binding pseudobarrel domain
CDDcd100176.12E-2731120No hitNo description
PROSITE profilePS5086315.00233138IPR003340B3 DNA binding domain
PfamPF023626.9E-3033137IPR003340B3 DNA binding domain
SMARTSM010193.1E-2333138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDLSLGSNEE TSAGNGGGDS SRSNIIVEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP  60
LDSSSNEKGL LLNFEDRNGK AWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DAGDIVSFQR  120
GVGEQGKDRL YIDWRRRPDA PDPTALAQMQ LQNQLHFQQS VLSYGNAPVQ YYLRPSGSQQ  180
IEAMQEGGNV PMVIDSVPIV HGKSTAAKQL RLFGVNMECS TQGESSSTIV PGYTMSSVSP  240
HLTSSYVPPH QSRERSSASL SRTKQPQYSN KGKSSLSFDL DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-69261381114B3 domain-containing transcription factor NGA1
5os9_B4e-69261381114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039561.11e-123PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2
RefseqXP_021611448.11e-123B3 domain-containing transcription factor NGA1-like isoform X2
SwissprotO827993e-83NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2C9VSH11e-122A0A2C9VSH1_MANES; Uncharacterized protein
STRINGcassava4.1_008697m1e-122(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-84B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,LapÄ—nas K,KauneckaitÄ— K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]