PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_923_f_8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 414aa    MW: 47592.9 Da    PI: 9.1643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_923_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05156179123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   y+C+ Cg+ ++++ +Lk+H +  H
  Neem_923_f_8 156 YVCGVCGRKCKTSLDLKKHFKQlH 179
                   9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10107.7E-676146IPR029060PIN domain-like
SMARTSM003550.0099156179IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699156184IPR007087Zinc finger, C2H2
PROSITE patternPS000280158179IPR007087Zinc finger, C2H2
CDDcd061671.16E-10170310No hitNo description
Gene3DG3DSA:3.40.50.10107.7E-6241295IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MKSEDCNRLI QKSLPRLTNE VKDELSLQLA RLSHSKTPKS ENRPPFFQIS SSSSGHAATF  60
EIDMVRNKQG IYTQKQHNKV VVLWDLDNKP PRGPPYDAAM SLRRVAEKFG DVTDMSAYAN  120
RHAFIHLPQW VIEERRERKQ LDILERRGQV FPAHPYVCGV CGRKCKTSLD LKKHFKQLHE  180
RERQKKLNRM RSLKGKKRQK YKERYINGNE KYNETARNLL RPKIGYGLGS ELRRAGVFVR  240
TVKDKPQAAD WALKRQMQHS MSSGIDWMVL VSDDKDFKEM LRKAKEANLG TVVVGDSNGG  300
LGQHADLWVP WIGVENGELS EKDLVPRRRR SEQVERDNSD LFSVTKFDGG VGLHGESNLD  360
SVVNEPVAER TEFGGVRISV FSEGGEEEED WMIEEVGGDY LLKDEEIEEN YGYF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434724.10.0uncharacterized protein LOC18041158
RefseqXP_024040192.10.0uncharacterized protein LOC18041158
TrEMBLA0A067GWV60.0A0A067GWV6_CITSI; Uncharacterized protein
TrEMBLA0A2H5NHA30.0A0A2H5NHA3_CITUN; Uncharacterized protein
TrEMBLV4V7880.0V4V788_9ROSI; Uncharacterized protein
STRINGXP_006434724.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-159C2H2-like zinc finger protein