PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9176_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 431aa    MW: 47155.5 Da    PI: 7.6087
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9176_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.4e-32248303156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Neem_9176_f_2 248 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 303
                    68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-17245306IPR009057Homeodomain-like
PROSITE profilePS5129413.355245305IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-28246306IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26248303IPR006447Myb domain, plants
PfamPF002497.3E-7250301IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSFGEQADQT QKLEEFLARL EEERFKIDGL KRELPLCMQL  60
LTNAVEVSRQ QIQAYRANQG PRPILEEFMP LKNASSENSE TKSPNISDKA NWMTSAQLWS  120
QTGNNETKPQ NTIASPKEND IGFNISPKLG LDTKPRNGGA FLPFSKERNL CPGPTLRALP  180
DLALASTDKE MEDKKCNENE IGRRSDNPGN NKVSNGAVVI NEQVKGGGNS TEGQTNSNNT  240
TNTQTHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY  300
RLHTRRPSPS PQAPGAPTPQ LVVLGGIWVP SEYATAAAAH SATPALYHHP SPHTAPHFCA  360
ASPGHSSPES DFRGAGDRSE SIEDGKSDSS SWKGESGENG VGGRRGLAAL REDGERVMEV  420
RLLSSSKELS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475768.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-127EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A067GKY60.0A0A067GKY6_CITSI; Uncharacterized protein
TrEMBLA0A2H5PDT90.0A0A2H5PDT9_CITUN; Uncharacterized protein
STRINGXP_006475768.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-104G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]