PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_908_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 609aa    MW: 68737.5 Da    PI: 5.0547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_908_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.37e-1973170195
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                   f+k+l++sdv++++r++lpkk ae+h    +  ++e++ +++ d++g  +W++k+++  +++s++yvl+ ++ +Fv+ +gL+ gDf++ +   + ++
  Neem_908_f_2  73 FQKELKNSDVSSLRRMILPKKAAEAHlpilE--SKEGIFISMDDLDGlHVWSFKYRFwpNNNSRMYVLE-NTGDFVNTHGLQLGDFIIVYQ--DnQN 164
                   99**************************644..557899********9*******9989999999***9.******************993..3366 PP

                   E..EEE CS
            B3  90 felvvk 95 
                   +++v++
  Neem_908_f_2 165 QNYVIQ 170
                   666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2765178IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-2571173No hitNo description
SuperFamilySSF1019364.9E-2171170IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-1573171IPR003340B3 DNA binding domain
PROSITE profilePS508639.82773175IPR003340B3 DNA binding domain
SMARTSM010195.0E-1973175IPR003340B3 DNA binding domain
SuperFamilySSF1182031.7E-127251594IPR004907ATPase, V1 complex, subunit C
PfamPF032232.8E-121256587IPR004907ATPase, V1 complex, subunit C
CDDcd147857.11E-140256590IPR004907ATPase, V1 complex, subunit C
Gene3DG3DSA:1.20.1460.103.1E-60292413No hitNo description
Gene3DG3DSA:3.30.70.1001.0E-32414502No hitNo description
Gene3DG3DSA:1.20.1460.103.1E-60503563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0033180Cellular Componentproton-transporting V-type ATPase, V1 domain
GO:0003677Molecular FunctionDNA binding
GO:0015078Molecular Functionhydrogen ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MMMDQTALTS SVHEKTEACA LMAGVEGVTV KGDKTRFGSD RGGSTSDLVS AVTSLVFSSA  60
AQVIDPNRLR FLFQKELKNS DVSSLRRMIL PKKAAEAHLP ILESKEGIFI SMDDLDGLHV  120
WSFKYRFWPN NNSRMYVLEN TGDFVNTHGL QLGDFIIVYQ DNQNQNYVIQ AKKASDQDMY  180
TNFTSDSVSD ILLNDYEVNR SSSFYVNYPM AEDTGLSFIY DTTTFSNDSP LDFLGGSLTS  240
YSREKTQSGP EMASRYWVVS LPVQNSASTL GNQLQEQISK HSFDTPLYRF NIPNLRVGTL  300
DSLLALSDDL LKSNSFVEGV SHKIRRQIED LEKLSGTESS SLTVDGVPVD SYLTRFVWDE  360
AKYPTMSPLR EIVDAIHTLV AKIEDDLKVR VAEYNNVRSQ LNAINRKQSG SLAVRDLSNL  420
VKPEDIITSE HLVTLLAVVP KYSQKDWLAS YETLTSYVVP RSTKQLYEDN EYALYTVTLF  480
GRVADNFRIA AREKGFQIRD FEYSPEAQES RKQELERLVN DQESLKTSLL NWCYTSYGEV  540
FSSWMHFCAV RIFAESILRY GLPPNFLACV LAPPVKSEKK VCSILEGLSG SANRLYLLIA  600
VLNLYFHDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1u7l_A5e-5929058548344Vacuolar ATP synthase subunit C
3j9t_O5e-5929058548344V-type proton ATPase subunit C
3j9u_O5e-5929058548344V-type proton ATPase subunit C
3j9v_O5e-5929058548344V-type proton ATPase subunit C
5vox_O5e-5929058548344V-type proton ATPase subunit C
5voy_O5e-5929058548344V-type proton ATPase subunit C
5voz_O5e-5929058548344V-type proton ATPase subunit C
6j9b_A2e-60691781110B3 domain-containing transcription factor FUS3
6j9b_D2e-60691781110B3 domain-containing transcription factor FUS3
6o7v_O5e-5929058548344V-type proton ATPase subunit C
6o7w_O5e-5929058548344V-type proton ATPase subunit C
6o7x_O5e-5929058548344V-type proton ATPase subunit C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSubunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170374e-44AC217037.1 Populus trichocarpa clone POP049-G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446960.10.0V-type proton ATPase subunit C
RefseqXP_006446962.10.0V-type proton ATPase subunit C
RefseqXP_006468875.10.0V-type proton ATPase subunit C
RefseqXP_006468876.10.0V-type proton ATPase subunit C
RefseqXP_006468877.10.0V-type proton ATPase subunit C
SwissprotQ9SDS70.0VATC_ARATH; V-type proton ATPase subunit C
TrEMBLA0A067E0G20.0A0A067E0G2_CITSI; V-type proton ATPase subunit C
TrEMBLA0A2H5Q4L70.0A0A2H5Q4L7_CITUN; V-type proton ATPase subunit C
TrEMBLV4U2W40.0V4U2W4_9ROSI; V-type proton ATPase subunit C
STRINGXP_006468875.10.0(Citrus sinensis)
STRINGXP_006446960.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-75B3 family protein
Publications ? help Back to Top
  1. Schumacher K, et al.
    The Arabidopsis det3 mutant reveals a central role for the vacuolar H(+)-ATPase in plant growth and development.
    Genes Dev., 1999. 13(24): p. 3259-70
    [PMID:10617574]
  2. Sze H,Schumacher K,Müller ML,Padmanaban S,Taiz L
    A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H(+)-ATPase.
    Trends Plant Sci., 2002. 7(4): p. 157-61
    [PMID:11950611]
  3. Hong-Hermesdorf A,Brüx A,Grüber A,Grüber G,Schumacher K
    A WNK kinase binds and phosphorylates V-ATPase subunit C.
    FEBS Lett., 2006. 580(3): p. 932-9
    [PMID:16427632]