PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9070_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 302aa    MW: 32772.4 Da    PI: 7.812
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9070_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.76.8e-3241081100
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++
  Neem_9070_f_2   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAA 99 
                    6*********************************************************************************************** PP

         DUF260  92 aelallkee 100
                    +e++l +++
  Neem_9070_f_2 100 VEAVLKGQP 108
                    **9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381559.6E-971300IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.213109IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQPIT PINSEAAAIG  120
QGPPLKAYDI RHVSKDENSA ASVDRVKTRC RVKRVVKPKA SKAEQVKAAD VPVRCVEAKC  180
YAEEMNRSTS HESSLSHQSE VAIAENESKD SESMVSVETA EAASLLFRAE PESNAKPDER  240
VAQDCGGGEI GLGLELTLGI EPVASRANHV VPVKKRKLES YGTWEGDTCK VELGLDYPAQ  300
VQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430780.11e-180hypothetical protein CICLE_v10013705mg
SwissprotQ9M8861e-111LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV4SY621e-180V4SY62_9R
STRINGGLYMA19G06280.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-98LOB domain-containing protein 41