PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8900_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 258aa    MW: 28524.9 Da    PI: 9.3561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8900_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-0585105323
                    ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                    C++C+k Fs++  L  H++ H
  Neem_8900_f_1  85 CKYCSKKFSNSQALGGHQNAH 105
                    ******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-670109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.36E-779110No hitNo description
PROSITE profilePS5015711.92683110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKKFEDKKMK GKVGEEEEAI SELHNCSLDL RLSNIVNEFD NQKSNPELNL LDSLDADLSK  60
GSESSEQKIM RSHANKAVGK KLFLCKYCSK KFSNSQALGG HQNAHKKERA ALRKDKNNNN  120
NNLVSFDQVS GPLIYPQPIT GSFDGSLGVQ VHSMIHKPYN YYHPLVHVIN RPQFPMHRNT  180
SADYWVPNGG FQVQPVGNMG FNRTVAPCGT FQSAFQPNSE AAATSKTPFP GQGSFWRGGF  240
SGNNQHGESA GPNLSLNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4T2K61e-65V4T2K6_9ROSI; Uncharacterized protein
STRINGXP_006430491.12e-66(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2130055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.18e-15C2H2 family protein