PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8542_f_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 363aa    MW: 38715.7 Da    PI: 8.286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8542_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-31127185259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Neem_8542_f_7 127 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 185
                    7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33111187IPR003657WRKY domain
SuperFamilySSF1182908.24E-28119187IPR003657WRKY domain
PROSITE profilePS5081129.757121187IPR003657WRKY domain
SMARTSM007741.5E-36126186IPR003657WRKY domain
PfamPF031061.3E-26128185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAPEQKVELN GMSSSLMSAQ QFMDPRPSAA LNVNDPSVSD DKTAREVSAS PANTAEVISK  60
EHEHPMIKIP GKQAFNNEDG GDQTSQSWGS PRSPNLDQTK NEEQASEAPF RKARVSVRAR  120
SEAPLITDGC QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAED RTILITTYEG  180
NHNHPLPPAA TVMANTTSAA AAMLLSGSTT SKDALTTSGF FPSVPFASTM ATLSASAPFP  240
TITLDLTQTP NPMQFLRSPS SPAAFPLPLH GCPPLLRQPM YAPRQPVVPN MQLGQRHASM  300
VETVTAAITS DPNFTAALAA AISTIMATPK SNDGNNNNLT SGLSAVLPGS PQLPQSCTTF  360
STN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22113189176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444621.10.0probable WRKY transcription factor 47 isoform X1
RefseqXP_024044530.10.0probable WRKY transcription factor 47 isoform X2
SwissprotQ9XEC33e-80WRK42_ARATH; WRKY transcription factor 42
TrEMBLG3FFC00.0G3FFC0_9ROSI; WRKY transcription factor 47-2
STRINGXP_006444621.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-79WRKY family protein