PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_848_f_8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 480aa    MW: 52643.4 Da    PI: 5.7218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_848_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-053724091254
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Neem_848_f_8 372 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 409
                   66778899999****9998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.579360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-12370428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-5372413No hitNo description
Gene3DG3DSA:4.10.280.104.4E-9374417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAEEFQAAIC GGTWWNPSRS SSLSPCSAAG IGMADHMGSY MWASSDMIDM KTPTTTATTK  60
SCEESNNSVS ADSSMVFQSA QKTQQTDSDS GGSSGVLMDS TLQMMSFGPS SSTDWNQVLL  120
RGNERAENNY RSMIQEDLNS QMEKEWSPKS FSSAADDSSI NVFKSINQDF PLDHHQLKPV  180
SSSGNCTVNC EGLSTGFPIT SASYGYSPSL LQSYFEPDPQ SQQSLYNNRS MNYMSTPNYG  240
TNSNELSPSW PKIPSFLKPS LPKQQPGGLH FSNNTPFWNA TASASASASS SLTDVRAGYF  300
PSSQFFPPTL EEKLNRPSLN TKSGNGEMRD SGSVGKKGSS EPPFKRPRIE TPSPLPTFKN  360
SMRSYMLCYQ VRKEKLGDRI TALQQLVSPF GKTDTASVLH EAIEYIKFLH EQVNVLTTPY  420
MKQGAQIQQQ QSYDKLKDPE APNQDLKSRG LCLVPVSSTF PVASETTADF WTPTFGGTFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635184.10.0PREDICTED: transcription factor bHLH112 isoform X1
TrEMBLD7SSM50.0D7SSM5_VITVI; Putative uncharacterized protein
STRINGVIT_00s0274g00070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-64bHLH family protein