PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8072_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 596aa    MW: 69141.8 Da    PI: 9.2501
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8072_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.62.7e-085373525
                   CHHHCHHHHHHHHHHHHHHHH CS
         bZIP_1  5 krerrkqkNReAArrsRqRKk 25
                   k err+++NReAAr+sR+RKk
  Neem_8072_f_3 53 KTERRLAQNREAARKSRLRKK 73
                   89******************8 PP

2bZIP_122.62.2e-0792109825
                    HCHHHHHHHHHHHHHHHH CS
         bZIP_1   8 rrkqkNReAArrsRqRKk 25 
                     r+++NReAAr+sR+RKk
  Neem_8072_f_3  92 LRLAQNREAARKSRLRKK 109
                    599**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-54874No hitNo description
PROSITE patternPS0003605671IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-593145No hitNo description
PROSITE patternPS00036093107IPR004827Basic-leucine zipper domain
PfamPF141444.3E-29189264IPR025422Transcription factor TGA like domain
PROSITE profilePS5007615.778404478IPR001623DnaJ domain
PRINTSPR006252.4E-10409427IPR001623DnaJ domain
SMARTSM002719.9E-10413470IPR001623DnaJ domain
CDDcd062571.05E-11413467IPR001623DnaJ domain
PfamPF002266.3E-16414475IPR001623DnaJ domain
SuperFamilySSF465651.01E-17414476IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.5E-17415477IPR001623DnaJ domain
PRINTSPR006252.4E-10427442IPR001623DnaJ domain
PRINTSPR006252.4E-10450470IPR001623DnaJ domain
PROSITE patternPS006360455474IPR018253DnaJ domain, conserved site
PRINTSPR006252.4E-10496515IPR001623DnaJ domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MSSTSTELAA LRRMSIFEPY PPISMWGDAF QGDASPNTDS STIVQVDARL DNKTERRLAQ  60
NREAARKSRL RKKVLGDAFI LLFLWMEGTH YLRLAQNREA ARKSRLRKKV LGDAFILLFY  120
GWKAYVQQLE SSRLKLAQLE QELERTRHQG LYIGIASDGS HYGLSAHINP GITAFEMEYG  180
HWVEEQNRQI CELRNALQAH ITDIELRILV ESGLNHYYNL FRMKADAAKA DVFYLISGMW  240
RTSTERFFQW IGGFRPSELL NILMPQIEPL TDQQVVDVCN LRQSSQQAED ALSQGIDKLQ  300
QTLVQSLTED QLISGSYHSQ MAAAVEKLDA LESFVNQADH LRQQTMQQMY RILTTRQAAR  360
ALLALGEYFH RLRALIVLPM TCRSYKYQNT VMSFDSLMVE LVGNYRTRNG QNELGRDADE  420
EQIKVAYRRL AKFYHPDVYD GRGTLEEGET AEARFIKIQA AYELLIDEER RRQYDKDNRV  480
NPMKASQAWM QWLIKKRKAF DQRGDMAIAA WAEQQQLELN LRARRLSHSK VDPEEERRIL  540
AREKKASKEY FNNTLKRHTL VLKKRDLMRK KAEEKKRAIS QLLAAEGLEL DTDDEA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384214.10.0transcription factor TGA7 isoform X2
SwissprotQ93ZE21e-147TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A371FDF40.0A0A371FDF4_MUCPR; Transcription factor TGA3 (Fragment)
STRINGXP_006434079.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-139bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]