PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7743_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 544aa    MW: 61934.4 Da    PI: 4.8927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7743_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046255276122
                    EEETTTTEEESSHHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                    + C  Cgk F++  + k+H ++
  Neem_7743_f_2 255 FYCVVCGKKFKSEKQWKNHEQS 276
                    78*****************876 PP

2zf-C2H212.30.00053515533220
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                    +C++Cg+ F ++  L++H+
  Neem_7743_f_2 515 VCEKCGEEFESRNKLHKHL 533
                    6*****************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.05E-22384IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.9E-23378IPR001623DnaJ domain
SMARTSM002717.4E-21668IPR001623DnaJ domain
CDDcd062574.91E-16765IPR001623DnaJ domain
PROSITE profilePS5007619.216776IPR001623DnaJ domain
PfamPF002263.3E-20873IPR001623DnaJ domain
PRINTSPR006251.4E-14927IPR001623DnaJ domain
PRINTSPR006251.4E-142742IPR001623DnaJ domain
PRINTSPR006251.4E-144868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576673.69E-14251297No hitNo description
SMARTSM004512.2E-5252286IPR003604Zinc finger, U1-type
PROSITE profilePS501579.162255284IPR007087Zinc finger, C2H2
SMARTSM003550.17255279IPR015880Zinc finger, C2H2-like
PfamPF121711.2E-10255280IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280257279IPR007087Zinc finger, C2H2
SMARTSM003553.2514538IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349514543IPR007087Zinc finger, C2H2
PROSITE patternPS000280516538IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MASEKRCLYE VLGLNKDCNP DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY  60
EVLSDPKERA WYDSHRSQIL FSDLNSAYNS VPNSVVPNLY SYFSNTAFSG YSDTGKGFYK  120
VYTDLFNKIY SAEINYVKKL GLGLDMVREA PIMGNLESPY GQVTAFYNYW LGFCTVMDFC  180
WVDQYDVMAG PNRKSRRVME DENKKLRNKA KREYNETKAS KYEEPEWARI DDEGDHDNGI  240
EGELEEENEM KRNEFYCVVC GKKFKSEKQW KNHEQSKKHK EKVAELRESF ADEDEVMETF  300
EELDVEVEEL GERFKEGLGV EEGESKNEAG GLSGEPSDED AENELFDVEV NGVNDEDEDN  360
EMSVLEAMVS EHKIRKNVAL RQEDEVSKPE VHLQNKIDEG EFMGYDNCRG PRRKNKKERG  420
KKSAGEATKG DRDGFKSKNE EANGHDNSSF MEQSSSHAFV ETGNSGTIDD LSDKDVKIPD  480
PPVDGKGTAK DRKPKLKYSS KGKKAKAASK NPSNVCEKCG EEFESRNKLH KHLGDTGHAS  540
LKFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1353731e-32BT135373.1 Lotus japonicus clone JCVI-FLLj-21E2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477664.10.0DNAJ protein JJJ1 homolog isoform X1
SwissprotQ9C9111e-165JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A067FQM80.0A0A067FQM8_CITSI; Uncharacterized protein
STRINGXP_006477664.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-149DNAJ heat shock N-terminal domain-containing protein