PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7709_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 316aa    MW: 36335.4 Da    PI: 8.4688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7709_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-1712103199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv + s++l+ + l++p kf++++gg+   s   tl  ++g +W+v l  +k ++++++ ++W eFvk + +  g f+vFk++++s+f  +v +
  Neem_7709_f_3  12 FFKVIL-SSTLEDKKLRIPAKFVKKFGGE--LSAVATLSVPNGCVWRVGL--KKDGRKIWFHENWDEFVKYHSIGFGYFLVFKYVKNSTF--HVLI 100
                    666664.66666777***********988..8999***************..999999***************************99999..**** PP

                    E-S CS
             B3  97 frk 99 
                    f++
  Neem_7709_f_3 101 FDT 103
                    997 PP

2B341.52.3e-13227313997
                    HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    ++ + +r++ p  f  ++ + + +   ++l++  gr+  +k+ +rk+s++  + l+kGW eF k n++++gD+++F+l++r++  l+v+vf
  Neem_7709_f_3 227 NSRNYNRVYAPAAFG-KYVNRSVQ--FVKLQNACGRERLIKI-HRKSSNSdgFHLRKGWGEFSKNNNIQAGDICIFELIRRENVLLKVSVF 313
                    555667888888888.56433334..699************9.555555556****************************98888999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-248106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-2410106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-2111102No hitNo description
PROSITE profilePS5086312.53411104IPR003340B3 DNA binding domain
PfamPF023623.8E-1512103IPR003340B3 DNA binding domain
SMARTSM010192.9E-1712104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-13214313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-13215311IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-11218313No hitNo description
PROSITE profilePS5086311.265219316IPR003340B3 DNA binding domain
SMARTSM010193.8E-4220316IPR003340B3 DNA binding domain
PfamPF023623.2E-11226313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSNPLVHTSS HFFKVILSST LEDKKLRIPA KFVKKFGGEL SAVATLSVPN GCVWRVGLKK  60
DGRKIWFHEN WDEFVKYHSI GFGYFLVFKY VKNSTFHVLI FDTTACQIDY PSNQNDKQNS  120
AQQDEMENEK SVEILDSTAT HKRPISPVKK REPEGKECKM EETEEMDELN GVNDDDDDEL  180
VALLEEKGIC ITGRHYLCSS EERERAIEIA RLVKPKHPSF MIILGSNSRN YNRVYAPAAF  240
GKYVNRSVQF VKLQNACGRE RLIKIHRKSS NSDGFHLRKG WGEFSKNNNI QAGDICIFEL  300
IRRENVLLKV SVFHQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479392.14e-86B3 domain-containing transcription factor VRN1-like
RefseqXP_024035724.14e-86B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035725.14e-86B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035726.14e-86B3 domain-containing transcription factor VRN1 isoform X1
STRINGXP_006479392.12e-85(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-33B3 family protein