PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7709_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 317aa    MW: 36674 Da    PI: 8.4568
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7709_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31.1e-1612103199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv ++s    ++ l++p kf++++g +   s   +l+ ++gr+W+v l  +k ++++++ ++W+ Fv  + ++ g fvvF++ ++s+f   v +
  Neem_7709_f_2  12 FFKVILQSTLEDKK-LMIPEKFVRKFGDE--LSAVAKLRVSNGRVWRVGL--KKDGRKIWFHENWNAFVMYHSICFGHFVVFEYLKHSTF--DVLI 100
                    78888777777666.***********865..8999***************..999999*************************9998888..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  Neem_7709_f_2 101 FDT 103
                    886 PP

2B350.53.8e-162323131698
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    l+ p  fa+++ + + +    +l+d+ gr+W +k+ y++++g+  ++ltk W+eF   ng++egD++vF+l++r++  l+v+vf 
  Neem_7709_f_2 232 LYAPAAFANKYVSRSIQ--CARLQDSCGREWPMKI-YWRSGGSagFYLTKRWNEFSVINGIREGDICVFELIRREDVLLKVSVFH 313
                    67799999999444333..49**************.666666667*****************************99989999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-237106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-238106IPR015300DNA-binding pseudobarrel domain
CDDcd100179.65E-1811102No hitNo description
PROSITE profilePS5086312.53411104IPR003340B3 DNA binding domain
PfamPF023621.7E-1312102IPR003340B3 DNA binding domain
SMARTSM010191.4E-1412104IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-17212313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-17212314IPR015300DNA-binding pseudobarrel domain
CDDcd100176.58E-13216312No hitNo description
PROSITE profilePS5086312.139217315IPR003340B3 DNA binding domain
SMARTSM010190.001218315IPR003340B3 DNA binding domain
PfamPF023626.9E-14231313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSKPLGHSSS HFFKVILQST LEDKKLMIPE KFVRKFGDEL SAVAKLRVSN GRVWRVGLKK  60
DGRKIWFHEN WNAFVMYHSI CFGHFVVFEY LKHSTFDVLI FDTTACEIDY PSTHNDKENS  120
GEQDEIKNEN SVQVLGSATA NKKRTSPVKK KVPQSKKCKM EEVEEMDEPD GVNDEDDLVA  180
LLQDKGICIT ERHYLFSTEE RERFIEIARF VKPKNPSFMA IVRPAKPNYY SLYAPAAFAN  240
KYVSRSIQCA RLQDSCGREW PMKIYWRSGG SAGFYLTKRW NEFSVINGIR EGDICVFELI  300
RREDVLLKVS VFHATIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1719731328141B3 domain-containing transcription factor VRN1
4i1k_B5e-1719731328141B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479392.11e-88B3 domain-containing transcription factor VRN1-like
RefseqXP_024035724.11e-88B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035725.11e-88B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035726.11e-88B3 domain-containing transcription factor VRN1 isoform X1
STRINGXP_006479392.15e-88(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-42B3 family protein