PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7709_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 197aa    MW: 22360.6 Da    PI: 9.0807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7709_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.2e-171121931698
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + p +fa+++ + + +    +l+d+ gr+W +k+ y+++ g+  ++ltkGW+eF + n +  gD++vF+l++ ++  l+v+vf 
  Neem_7709_f_1 112 NYAPATFANKYVSRSVQ--SAKLQDSCGREWPMKI-YWRSTGSagFYLTKGWNEFSEINVIHKGDICVFELIRMEDVLLKVSVFH 193
                    377999**999666556..59**************.666555558***************************9888889999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-1698194IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-14112193IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-14115191IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.266115195IPR003340B3 DNA binding domain
CDDcd100171.62E-12128192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVVGNSMILE KIVRKFGDEL SAVAKLRVPN GRVGRVLDTF VVFEYIKHST FDLLVFDTTA  60
CEIDYPPTQN DKQNSSEQDE IKNENSVEIL GSTTANKKRT SPVKKKNHKA KNYAPATFAN  120
KYVSRSVQSA KLQDSCGREW PMKIYWRSTG SAGFYLTKGW NEFSEINVIH KGDICVFELI  180
RMEDVLLKVS VFHATIE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2305334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-13related to vernalization1 1