PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7694_f_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 357aa    MW: 39690.5 Da    PI: 8.631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7694_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.7e-1419932597
                   TT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3 25 eh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                   ++      ++kk+ ++t++l+ +sg +W v +  + +++  ++  GW eFvk + L+e+D++ Fk++g+s f   v +f
  Neem_7694_f_6 19 AIpekvvkNLKKKLPVTVSLKGPSGFTWVVGI--TTRDNILYFCHGWPEFVKNHFLQENDILFFKYNGDSLF--DVLMF 93
                   4444444456677*******************..9999999*************************998877..56555 PP

2B333.48.2e-112603381897
                    --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE..EEEEE CS
             B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..grsefelvvkvf 97 
                    +p   +++h    +++  +++   ++ ++W  +++++k +++  l++GWk+F+ +n+L+e D++vF  d  g++   l+v++f
  Neem_7694_f_6 260 IPAGWMTKHlT-LENQ--DVI-LRLNEKTWVTRFQFCKPRCSGGLSGGWKNFAVDNNLDEFDVCVFNPDitGTKPVFLNVSIF 338
                    77777777742.3233..344.44677*********99999999***********************5422443333566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-4696IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-171994IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-161994IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.9562096IPR003340B3 DNA binding domain
PfamPF023629.2E-112088IPR003340B3 DNA binding domain
CDDcd100171.55E-123394No hitNo description
PROSITE profilePS508639.093243341IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-14248339IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-14249339No hitNo description
SMARTSM010190.002250341IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-11250330IPR015300DNA-binding pseudobarrel domain
PfamPF023629.8E-9259338IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGDICFSPL KLPIKLLEAI PEKVVKNLKK KLPVTVSLKG PSGFTWVVGI TTRDNILYFC  60
HGWPEFVKNH FLQENDILFF KYNGDSLFDV LMFDGQSKCE KAASYFVRKC GHTDHDGEYQ  120
TKRKIGENSV EVIPTSPQCD VGGASPEKTD DDDINKTPAG QPVVSQASSK RVRRVNSSVK  180
PVHTRRSLRS KELCTSFVEN EKAKPVAEPT SFIGDVASSP HYASNRRPVT EDEKKNAMLL  240
AQAALTADSF TVVMRPTHAI PAGWMTKHLT LENQDVILRL NEKTWVTRFQ FCKPRCSGGL  300
SGGWKNFAVD NNLDEFDVCV FNPDITGTKP VFLNVSIFRV VNDVSPLVQV APASLKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434884.11e-149B3 domain-containing protein REM16
RefseqXP_024038869.11e-149B3 domain-containing protein REM16
RefseqXP_024038870.11e-149B3 domain-containing protein REM16
TrEMBLA0A2H5NGY01e-149A0A2H5NGY0_CITUN; Uncharacterized protein
STRINGXP_006434884.11e-149(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-52B3 family protein