PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7557_f_9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 352aa    MW: 39692.6 Da    PI: 8.906
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7557_f_9genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.24.5e-2962118254
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYR 54 
                    prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ    +YR
  Neem_7557_f_9  62 PRLRWTPDLHLCFVQAVEKLGGQERATPKLVLQLMNIKGLSIAHVKSHLQarcsMYR 118
                    8*************************************************5555566 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-2758119IPR009057Homeodomain-like
PROSITE profilePS5129410.53758122IPR017930Myb domain
SuperFamilySSF466896.63E-1360116IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2062112IPR006447Myb domain, plants
PfamPF002492.9E-863111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTKKREISNG LEMNLFGRDE DEKGDDESKT KTSASSSNSV VEDGEKKASS SGVRPYVRSK  60
VPRLRWTPDL HLCFVQAVEK LGGQERATPK LVLQLMNIKG LSIAHVKSHL QARCSMYRSK  120
KIDDHGQVIN SRGHLMRSSD HFSHNLWHHS MLRGINQRIG SNFSDASWIG HGNSMLRPHM  180
NIGSRACFGE PLLARSIYGE IGSNIRNEAL YTRRNLAFSE QRIGRTSERH EDCLSYNCDA  240
FQTQSSSTVP SLWHGKERTK CCNYTPNPAN PNSKWMIDGL EEQSTGKRKA LEHDDLDLSL  300
SLGSKVRKEE VRRKLLGDEE EVESILLLSL SSSLTREICS TNLQRHSEAN NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1663118460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388811.11e-137uncharacterized protein LOC107178351
TrEMBLV4SHP81e-136V4SHP8_9ROSI; Uncharacterized protein
STRINGXP_006425115.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-44G2-like family protein