PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7539_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 388aa    MW: 43164.4 Da    PI: 9.2462
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7539_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014148171123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C+ Cg+ F  +++L++H+   H
  Neem_7539_f_3 148 FPCTACGEIFQKPHLLEQHQAIkH 171
                    89******************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.598148176IPR007087Zinc finger, C2H2
PROSITE patternPS000280150171IPR007087Zinc finger, C2H2
SuperFamilySSF563997.58E-15173387No hitNo description
Gene3DG3DSA:3.90.228.103.8E-4184290IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.8E-6320387IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MATSSNIGSF FNKFFSLFLI LLLHLGCFMF ISNNRAPTRK KRKPSPLSPT SSLSPSRGQP  60
HKRLASSWSY VKRIFSSSKT CKNSTQTRPS TPTLTSARSS QHSLVSMVPP DQTQISEIPP  120
RVKQPNSCPE SDISADHNPF FPLRNDIFPC TACGEIFQKP HLLEQHQAIK HAVSELVDGD  180
SGKNIVNIIF KTGWSNKDKN PKIHRILKIH NSPKILSRFE EYREIVKAKA ARNGAARKRD  240
ERCIADGNEL LRFYCSTFLC DLGLNGNSSI CNQQYCSVCG IVKSGFSPKL DGISTLSSSW  300
RAHVSIPEDI EEEFKFMNVK RAMLVCRVIA GRVGCDADHD VEISKEDGGF DSVVGRGASG  360
VHTRIDDEEL LVFNPRAVLP CFVIVYTA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299819.20.0uncharacterized protein LOC7478541
TrEMBLB9GIT80.0B9GIT8_POPTR; C2H2 family protein
STRINGPOPTR_0001s25700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-119C2H2 family protein