PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7353_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 306aa    MW: 33317.8 Da    PI: 6.9141
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7353_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-3198157159
                    ---SS-EEEEEEE--TT-SS-E.EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefpr.sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++pr sYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Neem_7353_f_1  98 LDDGYRWRKYGQKVVKGNPNPRwSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 157
                    59********************99***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-3583159IPR003657WRKY domain
SuperFamilySSF1182901.16E-2690159IPR003657WRKY domain
PROSITE profilePS5081136.02493159IPR003657WRKY domain
SMARTSM007747.6E-3598158IPR003657WRKY domain
PfamPF031068.6E-2399157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
TSSASVGPEY CNQSSSLPAQ NSNHIESGDA VDASSTFSND EDEDDRATHG SIGYDGEEDE  60
SESKRRKIEA YATEMSGATR AIREPRVVVQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRW  120
SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARNSSHVNSG NSNAVTAHAA  180
AAGQIHRPEP SQIHNSMARF DRPASFGSFR VPGRQQLGPS SGFSFGVNQP GLANLAMAGL  240
SPGQAELPVL PVHPYLAQQR QVSEMSFMMP KGEPKMEPMS EPGLNLSNRS AVYQQLMSRL  300
PLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3789160878Probable WRKY transcription factor 4
2lex_A2e-3789160878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4695341e-64AM469534.1 Vitis vinifera contig VV78X089168.35, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474751.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_015384697.10.0probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG771e-102WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2H5NBW90.0A0A2H5NBW9_CITUN; Uncharacterized protein
TrEMBLA0A2H5NBX40.0A0A2H5NBX4_CITUN; Uncharacterized protein
TrEMBLA0A2H5NC890.0A0A2H5NC89_CITUN; Uncharacterized protein
TrEMBLA0A2H5NCS50.0A0A2H5NCS5_CITUN; Uncharacterized protein
STRINGXP_006474751.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-95WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]