PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7285_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 259aa    MW: 26959.5 Da    PI: 4.9318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7285_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071123144223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  Cg+ F ++     H+r H
  Neem_7285_f_2 123 SCYVCGREFQSWKAVFGHMRAH 144
                    699*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MASPGKSPEK TPQETSRSRN VGSGFSPEHP TVPAGSANVS PTPQQQVEGG DTSLNVEQAA  60
VAGEVAVTQT PATENVEIPA ELPAEQGPHR KRERTETAGA SASGERKQKR KGELVEIPSK  120
SPSCYVCGRE FQSWKAVFGH MRAHKVGEER AASGAFPPPV FTPPGGSPER EQKALQEQLV  180
PTLLDIAQVL ARTQESATGS ASARPSGGEQ QIDLNVQTQE GSPAASAPAS PEKGGTKFDL  240
NRPPPDNGGD DEENAGGAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467184.14e-56uncharacterized protein LOC102610330
RefseqXP_024036150.14e-56uncharacterized protein LOC112096741
STRINGXP_006467184.12e-55(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.15e-11C2H2 family protein