PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_719_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HB-other
Protein Properties Length: 476aa    MW: 53356.5 Da    PI: 9.1145
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_719_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.5e-102293057
                  HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
      Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57
                  + +LA+++gLte+qV+ WF+ rR kek+
  Neem_719_f_2  2 KSQLAEQIGLTEKQVSGWFCHRRLKEKR 29
                  579************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.04E-6129No hitNo description
PROSITE profilePS5007111.677130IPR001356Homeobox domain
PfamPF000463.1E-7229IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-9229IPR009057Homeodomain-like
SuperFamilySSF466891.33E-7236IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MKSQLAEQIG LTEKQVSGWF CHRRLKEKRL SADEGFAVGR QDRSSGVIQD RGSGLRQDSC  60
GSTKQGDYRS IDPREVQSRM LYGHDFSAAD LAYDHRSQYT AHASGRDNTS SESSSFLQDR  120
LYSQSDDPYA VETSSYIRQN EAITLVNHNR ARSKEYKPSG YLKVKGEKEN VAISAVKKQL  180
GRHYREDGPP LGVEFDPLPP GAFESRSGDP VNEPFYVGNS RWSQSPDVPE IEKQNALGSR  240
YEVDNLKMDF QDSYVGEKLN SRHGSDFKGS KKSHHQLKQK SPVLHCFNSS PRQKSSLNMY  300
EDSDGETPVY DSNQGYSFSS KHDAGWMGLD SIMNHHDPYG GEIDGEEANP LLHNKPIVST  360
KVVRNSECVA KFANSTLGSS KSISKGERGP SKKKAKVKKL YGERKAIKGH CDPAKVKTHP  420
ADEMTFFCFT FDVLPCFNLT LKVAKRAKVE VPQRDFMAKA SYAEIPRWTN QIKGLV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3956358e-40FQ395635.1 Vitis vinifera clone SS0AFA14YN23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446272.10.0uncharacterized protein LOC18050776
TrEMBLA0A067EVA80.0A0A067EVA8_CITSI; Uncharacterized protein
STRINGXP_006446272.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-72HB-other family protein