PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_718_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 209aa    MW: 22792 Da    PI: 8.8926
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_718_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.28e-26493185
        DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
                  +C++C++lr++C++dC++ p++     +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++ + + 
  Neem_718_f_1  4 SCNGCRILRKGCSDDCIIKPCLdwinsADSQANATLFLAKFYGRAGLINLIEAGPPHLRPAIFKSLLYEACGRIVDPISGSVGLLCTSSA 93
                  6*********************9999777889***************************************************9987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.1513108IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-22492IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSDDCI IKPCLDWINS ADSQANATLF LAKFYGRAGL INLIEAGPPH  60
LRPAIFKSLL YEACGRIVDP ISGSVGLLCT SSATPAAALA STPSNPPLKI YDIRHVSKDP  120
GSENSKSRLK RSWNRQPKPS VGANQSRGKA LSHEYSWLQN QFGHAESRED ESIFSVETVE  180
GSLMNRSKPR LAQNEVGLEL TLGLPPINQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469084.12e-88PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA303e-61LBD42_ARATH; LOB domain-containing protein 42
TrEMBLV4UHF99e-88V4UHF9_9R
STRINGGLYMA18G53440.13e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-56LOB domain-containing protein 42