PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_686_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 343aa    MW: 38008.7 Da    PI: 10.0544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_686_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31272329359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Neem_686_f_1 272 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGDHNHS 329
                   99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.9E-14223268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.2E-33258329IPR003657WRKY domain
PROSITE profilePS5081130.641265331IPR003657WRKY domain
SuperFamilySSF1182907.59E-27267329IPR003657WRKY domain
SMARTSM007747.4E-38270330IPR003657WRKY domain
PfamPF031066.6E-27272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAVELMMGYR NNSHFTDKVE DSAVQEAASG LESVEKLIKL LSEQQHLNEE NFNHQSSSTS  60
RSSMDLDADC KAVADVAVSK FKRVISLLGR TRTGHARFRR APVASPTASP PVNQNQNLNQ  120
NNQFPETKIF YATPIQQIPP LPPRNHHHEF STLVVPKNGV LERKDSHTTI NFSYSSAGNS  180
FVSSLTGDND QKQQPSSSSA FQFTNLSQVS SAGKPPLSAS SLKRKCSSEN LVSGRCSLST  240
SRCHCTKKRK SRIKRVVRVP AVSLRMSDIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR  300
GCPARKHVER ALDDPSMLVV TYEGDHNHSL SIADARNLIL ESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-212683301576Probable WRKY transcription factor 4
2lex_A4e-212683301576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380693.11e-176probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-94WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA9PII71e-174A9PII7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s10670.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-75WRKY DNA-binding protein 7