PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6700_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 579aa    MW: 63672.7 Da    PI: 4.24
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6700_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0588111123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C++C+++F  k+ + +H+ + H
  Neem_6700_f_3  88 FECHKCDMTFDEKDAYLQHLLSfH 111
                    89******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5888116IPR007087Zinc finger, C2H2
SMARTSM003550.08888111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090111IPR007087Zinc finger, C2H2
SMARTSM0035564135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MSGCPGGQHF VSCKEVSGYL QSYFGLHEAH LATDNAGDNI FDEYRAASES LVGITQKEND  60
QRQYNEQGKE VRLLGIDNLA EVQIRDLFEC HKCDMTFDEK DAYLQHLLSF HQRTTRRYRL  120
GSSVGDGVII KDGKFECQFC HKVFHERRRY NGHVEPPGRS RLQNKNESPT RAEFPARAEF  180
PTRDELPTRD EFPARISKMD ALIEIAQNSI LETSSARSNV EPDGGSGTDK LNQVSNPELP  240
ASASDHELTS DSALSEPEVD DDMINANLDQ ESYQQNNDYK VTNEKMETID DASNLMDVKI  300
DSCVDPAAVL PTDEQNGYSS ETSGEKGGLA FIADEIDKSG IELEGGCEIH SHGQLINQKA  360
CPLETNVNLG CSNAVEHGEP DEMNDISIKL EDDFGCNNVG FANDEIPVTV AQNLEENLPN  420
HGVSKLSMSM LEPSRGFPAP NALPIQEEDD DGPRAEQRHS SSATGFEELK FDKIEQNLKY  480
GFESGQAKEP ISQPEVPNNA GISEGSYGSS SAQLQSSEAV MLSRDGDDNL TNCVWCGMEF  540
RHEEGVDSEI QQMQSDSVGY MCPTCKAKIS GPLTVLGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492635.10.0uncharacterized protein LOC102626569 isoform X1
TrEMBLA0A2H5PST30.0A0A2H5PST3_CITUN; Uncharacterized protein
STRINGXP_006492635.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1540723