PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6637_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 344aa    MW: 38471.9 Da    PI: 6.661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6637_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.98e-05180199120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C k+F+r  n++ H+
  Neem_6637_f_2 180 FSCPLCFKTFNRYNNMQMHM 199
                    89*****************9 PP

2zf-C2H214.69.7e-05264286123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  Neem_6637_f_2 264 FMCRKCGKAFAVRGDWRTHEKNC 286
                    89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66180207IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-5180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-6245284No hitNo description
Gene3DG3DSA:3.30.160.609.2E-6260284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549264284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808264284IPR007087Zinc finger, C2H2
SMARTSM00355190290313IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSDPYSNYFN GCTNTSFSAH FQSSSPPSPP LKEALPLLSL SPTRHEEQEF SCSAMEVDRN  60
KESTDKEALP LLSLSPTRHE EQEFSCSAME VDRNKESTEE SSLFSVSADD HEASVTVALH  120
LGLPNPSSAD LISGISSTEI SDKEEEVTVA ASGLSTSSRL NKGQYWIPTP AQILIGPTQF  180
SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCYCCA PGCRNNIDHP  240
RSKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCTCGSDFKH  300
KRSLKDHIKA FGHGHASCGI DSFEEDDAAS EIEQDNNESS RDID
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830897.11e-176PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-133ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2I4FGY61e-175A0A2I4FGY6_JUGRE; zinc finger protein WIP2-like
STRINGEOY326021e-163(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]