PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6617_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 430aa    MW: 47777.6 Da    PI: 7.4981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6617_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30298356259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqK+ kg+++pr+YYrC+ a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Neem_6617_f_1 298 SDGCQWRKYGQKTAKGNPCPRAYYRCSLAtGCPVRKQVQRCAEDKTILITTYEGNHNHP 356
                    7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-32282358IPR003657WRKY domain
PROSITE profilePS5081129.551292358IPR003657WRKY domain
SuperFamilySSF1182903.4E-27294358IPR003657WRKY domain
SMARTSM007747.8E-36297357IPR003657WRKY domain
PfamPF031068.2E-27299356IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSISTTGDDE CAARQNTSMI TDSSNYDRLT TIKELDFFAM HSNDNDHPAK IDDQLQTSHI  60
CPSPSDELFT NFTVGEKLLT LSTATARPLK NEDRNDPNLT QLVGEKLLTL STATARPLKN  120
EDRNDPNLTQ LLRKLQVEVE KSKEENKILR STLDLIKTKY KALQSQLLSA MHRPVASKSC  180
GDQLQDERNG GGDVPALSTI RFLDHDQVPL AEEMGISDHR PWQYSEKKTA DRLMSSPTID  240
VDAMRRDCQS ITNQVGKKRI SRDDDDANYT TKNYEQELLP YRKARVSIRA RSVAPMLSDG  300
CQWRKYGQKT AKGNPCPRAY YRCSLATGCP VRKQVQRCAE DKTILITTYE GNHNHPLPPA  360
ATAMAVITSA AANMLVSDSI LSNSGIISAL PNYHASTFAT LSTSTPHPTI TLDLTPTNNP  420
ASTRFNNANF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23284360176WRKY transcription factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.17e-65WRKY family protein