PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6527_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 407aa    MW: 44646.8 Da    PI: 9.8103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6527_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032176198223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     C+ Cg++F+  ++L+ H+ + H
  Neem_6527_f_3 176 ACSQCGEVFPKIESLELHQAVrH 198
                    6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808175203IPR007087Zinc finger, C2H2
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-26200406No hitNo description
Gene3DG3DSA:3.90.228.103.6E-15201405IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MALLTFLPES AESRKQQQPP KRKKKQQKQK QPSSWAQIKN LLTCKQIEGS RVHDPAKNAQ  60
GYSKLGSSCS SICSFKDVVH GNTKVVHRAD NSPESSTVGQ ETGLPSRKAV TGTSTRSAAR  120
SNGGGTYTSS SKGMQFRKLS GCYECHTIID ASSKYRNVLN LSAKIRFPSA RTTICACSQC  180
GEVFPKIESL ELHQAVRHAV SELGPEDSSR NIVEIIFKSS WLKKDSPMCK IERILKVHNT  240
QRTIQRFEDC RDAVKTRALN STRKNPRCAA DGNELLRFHC TTLSCNLGSR GSSSLCGSVP  300
GCSVCTIIRH GFQGKECKGV RTTASSGRAH DSLKNCTDER RAMLVCRVIA GRVKRVTDDA  360
PPEEDSVSAG SYDSVAGYAG IYSNFEELFV YNARAILPCF VVIYKSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473648.10.0uncharacterized protein LOC102626182
TrEMBLV4TFF40.0V4TFF4_9ROSI; Uncharacterized protein
STRINGXP_006473648.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-153C2H2-like zinc finger protein