PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6227_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family YABBY
Protein Properties Length: 197aa    MW: 22260.2 Da    PI: 7.9495
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6227_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2022.3e-6271595170
          YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+ ++         ++ +  + e  ++   ++++++++ +    
  Neem_6227_f_1   7 VAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCANLWSVNMAAAFQSLSWQDV--------QAPNYTSPEYRIDLGSSSSKCNNKMTMRAP 94 
                    679*********************************************9999999885........333333334444433333333333322222 PP

          YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++n +ee      ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Neem_6227_f_1  95 -TNNATEER----VANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159
                    .22333332....369****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.7E-718159IPR006780YABBY protein
SuperFamilySSF470954.58E-8102152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.4E-4106153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSSCIDVAAE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCANLWSV NMAAAFQSLS  60
WQDVQAPNYT SPEYRIDLGS SSSKCNNKMT MRAPTNNATE ERVANRPPEK RQRVPSAYNQ  120
FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LETNNQPKLD DLFTQCYHEF  180
SQASEKRLVS RAALLNK
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4560971e-45AM456097.2 Vitis vinifera contig VV78X047607.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285328.11e-121PREDICTED: axial regulator YABBY 5
SwissprotQ8GW464e-89YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD7TC401e-120D7TC40_VITVI; Uncharacterized protein
STRINGVIT_11s0016g05590.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-91YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]