PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6053_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 153aa    MW: 16967.6 Da    PI: 8.2728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6053_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-054365123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C + F ++  L  H++ H
  Neem_6053_f_2 43 FSCNYCQRKFYSSQALGGHQNAH 65
                   89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-64070No hitNo description
PROSITE profilePS5015711.0944370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDFQPNTSLH LSLPNNQINL ELVLEPSSSS SSSPNSPAEP RTFSCNYCQR KFYSSQALGG  60
HQNAHKLERT LAKKSREFSS AVRAHGGSNP RSGSSHGLHF NSTLGGFEHQ GHPGRFAGEL  120
SYGGREMNYS SMSYRPENVH QEEFNQLDLS LRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458332.13e-66zinc finger protein 2
SwissprotQ392615e-33ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A3N7FA956e-65A0A3N7FA95_POPTR; Uncharacterized protein
STRINGGorai.004G100800.11e-64(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-33zinc finger protein 2