PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5750_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 273aa    MW: 30339.9 Da    PI: 6.9508
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5750_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.43.6e-09219242225
        G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                    +r+ W+p+LH+rFv+a++ LGG +
  Neem_5750_f_1 219 NRRSWSPQLHARFVNALNILGGVQ 242
                    799*******************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-6217243IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGSSSLELTL SLKPSYVPKT ISNLLSDLSK IDSASDKLSL LNDYLQKYQE ELSRVQDLKR  60
ELPQCMLLLM DAIETLKEEI VSVGNSKEPD SDKPLMEFLS MKRKLYENPE ERILWNNPIP  120
DKKQKAILHP TQALSLTPIQ PCKKSKTEVP LMAARGSSGT GSLLLPVSTV EKQRGKEPAV  180
ANIPPEPGTV GIGGLNLRTD PITLNYHPEP LTEKIWKNNR RSWSPQLHAR FVNALNILGG  240
VQDLSSYIFG YLFELTTSPL SAITLVDPDH NLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974521.18e-63PREDICTED: myb family transcription factor EFM
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15410716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-14G2-like family protein