PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5396_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 567aa    MW: 63589.3 Da    PI: 7.29
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5396_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-055576223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   +C+ Cgk F +   L  H+r H
  Neem_5396_f_3 55 QCKVCGKDFESLKALYGHMRHH 76
                   7*******************99 PP

2zf-C2H218.27e-0686106323
                    ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                    C+ Cgk F ++ +L +H+r+H
  Neem_5396_f_3  86 CKECGKAFLSSKSLANHMRVH 106
                    *******************99 PP

3zf-C2H213.30.00025369390223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    kC+ C+k+F ++  L  H+r+H
  Neem_5396_f_3 369 KCKTCNKVFYSRRALGGHQRMH 390
                    7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.035476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4485481IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-45578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-75578IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-1055106No hitNo description
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.54984111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-784108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00184106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.281368395IPR007087Zinc finger, C2H2
SMARTSM003550.024368390IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-4369391IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-8369390No hitNo description
PROSITE patternPS000280370390IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-8447474No hitNo description
PROSITE profilePS5015710.928452479IPR007087Zinc finger, C2H2
PfamPF139128.0E-10452476IPR007087Zinc finger, C2H2
SMARTSM003551.3452474IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280454474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDSAKEEVKK SNTSNMGFQD DGHIGYDLRE NPKKSWKFSG FKQDAPASIQ ESLNQCKVCG  60
KDFESLKALY GHMRHHSGRE RRKIHCKECG KAFLSSKSLA NHMRVHSQKI KVCNESRTSS  120
SHDEALKSLV VKRKRSERKR YNFAASSSIS SLNESVSVVD IDQEVEQAAR CLMMLSAGLQ  180
NWGEFYSFGE FSDNDSVTFE VKAFNKRKRI VTHDGGYFDS NGSETFKMKK PREVKSDTCV  240
SESLIGLYEK EEDACIEMDS GAESNEGKKV KLEVSIERFY QSSEFKVPNL DDKPGSVSSD  300
SEIEKEILGD VNFKYTDVES SEGLMEAVGL GLGISTSASS KKVNFQASDA EFGGDYEILD  360
DSQKTSKVKC KTCNKVFYSR RALGGHQRMH RTRKSFTPVK TEDSEKQDRT AILPEIEAGC  420
KAVKFEFVEN LMEQEIGGTA VKDSESRESK LHKCHICLKA FATGQALGGH KRAHLGKNSE  480
TIPNQIAVKQ DYSSDIYDEL DLHTPVELHK HANNADVESK PWWVGREHKH EPLTLGTNQS  540
VQIIEQPKSL KSTELSVKFG SLLLSWS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482785.11e-167putative uncharacterized zinc finger protein 814
TrEMBLA0A067G2Z31e-166A0A067G2Z3_CITSI; Uncharacterized protein
STRINGXP_006482785.11e-166(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-12C2H2-like zinc finger protein