PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5394_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 255aa    MW: 28723.1 Da    PI: 8.32
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5394_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-2889149159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a  gCpvkkkv+r+ ed+++++ tYeg Hnhe
  Neem_5394_f_1  89 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMAasGCPVKKKVQRCGEDESFLVATYEGVHNHE 149
                    58***************************999****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-2980150IPR003657WRKY domain
PROSITE profilePS5081126.25784151IPR003657WRKY domain
SuperFamilySSF1182902.35E-2585150IPR003657WRKY domain
SMARTSM007742.5E-3289150IPR003657WRKY domain
PfamPF031061.3E-2390149IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDSHNSTQEK VEELQERLEQ VLKENENLRS MVEVMNNHCN ILQARIQEAR AYSSDFNNIN  60
GEKAQIPLAN GKTTRILVKT DSRDNSLIVK DGYQWRKYGQ KVTKDNPSPR AYFRCSMAAS  120
GCPVKKKVQR CGEDESFLVA TYEGVHNHEV HSLLGQSFSS SPKTSTMANN VHSRTDQTTD  180
PFGSDITLDL TLSGASQENQ RTSQNILPES NNNKRKKKME EYVASLTRDP NFTIALAEAV  240
ASSITELPRP TRRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2074150173WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483475.11e-103WRKY transcription factor WRKY76
TrEMBLA0A0A7NNK31e-104A0A0A7NNK3_9ROSI; WRKY40
STRINGXP_006483475.11e-103(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156101014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.21e-41WRKY DNA-binding protein 18