PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5359_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 297aa    MW: 33331.7 Da    PI: 9.8471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5359_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.6e-29238294358
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                    D y+WrKYGqK++kgs++ rsYYrC+ + +Cp++k+ver+ edp+++++tY g+Hnh
  Neem_5359_f_2 238 DDYTWRKYGQKPIKGSPHLRSYYRCSGTsSCPARKRVERCVEDPTMLVVTYAGDHNH 294
                    99************************988**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.6E-8197234IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-30228294IPR003657WRKY domain
PROSITE profilePS5081126.613231294IPR003657WRKY domain
SuperFamilySSF1182905.75E-25232294IPR003657WRKY domain
SMARTSM007748.6E-33236296IPR003657WRKY domain
PfamPF031061.1E-24238294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNPSWEFSVQ EIAESSFRHA NHLFSCISNQ NQKSIQEVSL IAQDAVNGFA KLLTLLDGSM  60
PPYCKRIRKG PLRNSSDVNP IQFMDSPISM SQNSKCNSNQ SHIVGQLMPL TSRVLITTGG  120
FNLYGKNQKL ALQYYYSETN PVGSSKLIRG FSHSSQQMNL SKTSSEENHV DKKITHHSSS  180
QILASRDESS TFYKSKEASA RYVASTGACH CSKQWKLRIR KIACAPAVSN KQSDIPPDDY  240
TWRKYGQKPI KGSPHLRSYY RCSGTSSCPA RKRVERCVED PTMLVVTYAG DHNHLRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-162342941271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921503.11e-106probable WRKY transcription factor 15
SwissprotO221761e-40WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0D2S2Y11e-100A0A0D2S2Y1_GOSRA; Uncharacterized protein
STRINGGorai.004G199500.11e-101(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.14e-43WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]