PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5346_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 151aa    MW: 16404.4 Da    PI: 10.2225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5346_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68e-193468135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Neem_5346_f_1 34 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 68
                   ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-122869No hitNo description
PROSITE profilePS5011412.2022864IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-132881IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-153268IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.51E-123368No hitNo description
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
PfamPF003209.1E-173468IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MLDPNDKGLE CDEVNSKNQG GGISSEENGN KKTCADCGTS KTPLWRGGPA GPKSLCNACG  60
IRSRKKRRAV LGITKEERKP KRGNNTSSNN SSSNSNNNNK QLGDSLKQRL YALGREVLMQ  120
RSTVEKQRKK LGEEEQAAVL LMALSYGSVY A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419440.13e-74GATA transcription factor 16
RefseqXP_006488880.13e-74GATA transcription factor 16-like
SwissprotQ8LG101e-50GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2H5N6B47e-73A0A2H5N6B4_CITUN; Uncharacterized protein
TrEMBLV4S1V47e-73V4S1V4_9ROSI; Uncharacterized protein
STRINGXP_006488880.11e-73(Citrus sinensis)
STRINGXP_006419440.11e-73(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-49GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]