PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5183_f_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 227aa    MW: 25383.3 Da    PI: 4.4986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5183_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.1e-3971071100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrr+C++dC++apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e++
  Neem_5183_f_7   7 SCGACKFLRRRCTNDCIFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQVANLQEEIE 102
                    6************************9789******************************************************************9 PP

         DUF260  96 llkee 100
                    +l+++
  Neem_5183_f_7 103 VLENH 107
                    98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7256108IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRRCTN DCIFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITISY EALARMRDPI YGCVAHIFAL QQQVANLQEE IEVLENHMAN HLIGVVYGGN  120
SQAPNEPCDQ SYFSPDLDAM NTLYYQNQQP DQLLLNHEGN INVSQAFGGQ MNTELPSLQG  180
WEEQNFLPDS SPNDALRTLD GMDQENFVYK PWFDINGNAA NLRDPTW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435636.11e-130hypothetical protein CICLE_v10033354mg
TrEMBLV4TGP21e-130V4TGP2_9R
STRINGPOPTR_0010s20800.13e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-58LOB domain-containing protein 33