PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5150_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 227aa    MW: 25609.2 Da    PI: 4.2894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5150_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.76.3e-2075111237
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+
  Neem_5150_f_4  75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQ 111
                    69*************************998******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-2068111IPR003657WRKY domain
PROSITE profilePS5081121.71269111IPR003657WRKY domain
SuperFamilySSF1182902.48E-1770113IPR003657WRKY domain
SMARTSM007741.4E-1474124IPR003657WRKY domain
PfamPF031067.1E-1776111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDGRFSGNRF VSEQEENDTT PENSSESPPS TTFNDMKMTS TSSPKKRRAM QKRVISVPIK  60
DVEGSRLKGE SAPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QPDPEPEPEQ  120
PEPEPEVEAE REPEPEEKFA DLGDDNTLLT TSADEFTWFG EMETTTSTIL ESPIFAERSG  180
SQVDSDNMSM FFPMREEDES LFADLGELPE CSMVFRHRNL GPEVQIC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467614.11e-106probable WRKY transcription factor 65
SwissprotQ9LP566e-73WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A067GR401e-104A0A067GR40_CITSI; Uncharacterized protein
STRINGXP_006467614.11e-105(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-39WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]