PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5060_f_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 206aa    MW: 22459.4 Da    PI: 9.3173
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5060_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.71.9e-19294197
         DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93
                   +C++C+vlr++C++ C+l+  +     p++q +++ +++k+FG+s +l++++a+pe++r+         A+ r+ +Pv Gavg++++++++++q+++e
  Neem_5060_f_7  2 SCNGCRVLRKGCSETCILRSSLhwidtPEAQGNATLFLAKFFGRSDLLSFIAAVPETQRP---------ACGRTVNPVDGAVGLLSSGNWHICQAAVE 90
                   6**********************************************************8.........89*************************99 PP

         DUF260 94 lall 97
                   ++l 
  Neem_5060_f_7 91 TVLS 94
                   8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.647198IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-15292IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR SSLHWIDTPE AQGNATLFLA KFFGRSDLLS FIAAVPETQR  60
PACGRTVNPV DGAVGLLSSG NWHICQAAVE TVLSGGTLRP ITGVYNSGVI RPNSEENYVN  120
AYMAKNQPPQ SKPLILKDGR DQHRKSDTDP SPATKFGGTG KRGRARRINA MSFYSEESEM  180
TSFESGGSDE TKKRGNQEKK LLNLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068238.12e-75PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SZE82e-56LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A067LAV82e-75A0A067LAV8_JATCU; Uncharacterized protein
STRINGPOPTR_0002s12020.16e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-57LOB domain-containing protein 39