PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_464_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 270aa    MW: 30237.7 Da    PI: 9.3125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_464_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016102124123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C++ Fs++  L  H++ H
  Neem_464_f_4 102 FSCNFCKREFSTSQALGGHQNAH 124
                   89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-699129No hitNo description
Gene3DG3DSA:3.30.160.603.3E-4100128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKARLFSEAG SSLQASTTSE GMGIINPCMK MKGVVVEASE PKHNINNITE SSSGGTLVLD  60
LKLSNDDHRG DNSKIELNLL SNINATENDN SLEKQPAENR VFSCNFCKRE FSTSQALGGH  120
QNAHKQERAL AKRRHQGIDQ EVATNFGFGN QNFSYYYSPN YSSINSRPHP FYNTSFNKPL  180
GIKMDSMIHK PYNSYPWQSS SSDYRFGLAG LFPRQSLVNP QPSFTERMTM NGFGNFAASR  240
RFGENEVLAT SNDIIQLNKP SRIEFLRRGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432359.12e-54zinc finger protein 3
TrEMBLV4V1D35e-53V4V1D3_9ROSI; Uncharacterized protein
STRINGXP_006432359.19e-54(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-20C2H2 family protein