PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_450_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family M-type_MADS
Protein Properties Length: 384aa    MW: 43251.6 Da    PI: 6.5991
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_450_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.58.4e-243175145
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  kr e+++nrqvt+skRrngilKKA ELS+LCd+++ +++fs++g+
  Neem_450_f_2 31 KRLESTTNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPNGR 75
                  689****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.9322383IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-322382IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2624110IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-202545IPR002100Transcription factor, MADS-box
PfamPF003195.4E-213378IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-204560IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-206081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MENSRHLLGY RSTKDCANLI CRMGRVKLKI KRLESTTNRQ VTYSKRRNGI LKKARELSIL  60
CDIDIVLLMF SPNGRPTLFH GSRSNIEEVI ARFAQLTPQE RAKSTQTVEE LTNHVRILQA  120
QLTEAHQRLR YWNNPDNIDS VEHLRQMENS LRESISRISL HKENFGKQQF MSLEFTSQGG  180
MQLPLMMSGV QENQPLSWLP NNDGQNMLVP NEPNFLSQSQ RDMGCSEDTP IPGYSGLLAA  240
GKEIEVANSG QADNIRNGGS NLNELGTSAC LSLQLGEQYS YSPYSSLNLS DDKKLKPDVE  300
MNLQGNPAVY QVNGNFELPR PVYGNGHHDW ISASGPCGTT IFDENSYLQV RILSNCIYYT  360
LSNFSLFIIA TEHSSFDSLS SSFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-1423111188Myocyte-specific enhancer factor 2B
1tqe_Q5e-1423111188Myocyte-specific enhancer factor 2B
1tqe_R5e-1423111188Myocyte-specific enhancer factor 2B
1tqe_S5e-1423111188Myocyte-specific enhancer factor 2B
6c9l_A5e-1423111188Myocyte-specific enhancer factor 2B
6c9l_B5e-1423111188Myocyte-specific enhancer factor 2B
6c9l_C5e-1423111188Myocyte-specific enhancer factor 2B
6c9l_D5e-1423111188Myocyte-specific enhancer factor 2B
6c9l_E5e-1423111188Myocyte-specific enhancer factor 2B
6c9l_F5e-1423111188Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440615.10.0agamous-like MADS-box protein AGL65
RefseqXP_024044106.10.0agamous-like MADS-box protein AGL65
RefseqXP_024044107.10.0agamous-like MADS-box protein AGL65
RefseqXP_024044108.10.0agamous-like MADS-box protein AGL65
SwissprotQ7X9I03e-79AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLV4TQ760.0V4TQ76_9ROSI; Uncharacterized protein
STRINGXP_006477467.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.19e-77AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]