PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4449_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 353aa    MW: 39293.7 Da    PI: 6.5134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4449_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.2e-28186246259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqKe+ +s++prsYYrCt++   +Cp+kk+v+r ++dp ++eitY+g+H+++
  Neem_4449_f_1 186 EDGYTWRKYGQKEILNSKYPRSYYRCTHQklyQCPAKKQVQRLDDDPYTFEITYHGDHTCH 246
                    7****************************9999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-28181247IPR003657WRKY domain
SuperFamilySSF1182905.75E-26183247IPR003657WRKY domain
SMARTSM007742.5E-37185247IPR003657WRKY domain
PfamPF031064.9E-26186246IPR003657WRKY domain
PROSITE profilePS5081120.564186248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTSQISRGQQ KRRENMEEII SLILNGCKLA GELESNLPNI ANQPEMIASS CDEIIQSFLS  60
ARERLSGQPS ALFYPATGQM PFHEQHQPPQ IDLNLQQLLR SSVTQAMDVI QTQILAAQRN  120
PFEIGDQIGG RELRTSTGGE VLHQPMDVSD SSRGSSSQQR NRRSSENART VRQPAPRIGN  180
TEIPPEDGYT WRKYGQKEIL NSKYPRSYYR CTHQKLYQCP AKKQVQRLDD DPYTFEITYH  240
GDHTCHMSST APSVLPSAAE ITQEMTQSIT MQPSSISLGR WLSMDVAGGS GSSMPGAGPS  300
STARYDHQRE AGGDQYLVAS MADAMFNSGS SSSNSMEFLF SSSLEDQKQR SWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20186245968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435942.11e-134WRKY transcription factor 55
RefseqXP_006486151.11e-134WRKY transcription factor 55
TrEMBLA0A2H5PNJ51e-133A0A2H5PNJ5_CITUN; Uncharacterized protein
TrEMBLV4T7L21e-133V4T7L2_9ROSI; Uncharacterized protein
STRINGXP_006486151.11e-134(Citrus sinensis)
STRINGXP_006435942.11e-134(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-49WRKY DNA-binding protein 55