PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_433_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 341aa    MW: 37989.7 Da    PI: 6.1079
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_433_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.94.8e-34175233159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+edp++v++tYeg+H+h+
  Neem_433_f_4 175 LDDGYRWRKYGQKAVKNSPHPRSYYRCTTAGCGVKKRVERSSEDPTIVVTTYEGQHTHP 233
                   59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.6E-981339IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.807.2E-36160235IPR003657WRKY domain
SuperFamilySSF1182904.58E-30167235IPR003657WRKY domain
PROSITE profilePS5081133.27170235IPR003657WRKY domain
SMARTSM007747.3E-41175234IPR003657WRKY domain
PfamPF031061.4E-27176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEKKEDSSIS MANSTFSDEN PASSFSLPSI FDISCEGDKW GSNSFGLVDL LNFHNQDFGA  60
ASLFDYPLQQ PPILPPPPQQ QQQQQQQPLP SPASTVPESS EVLNNPATPN SSSISSSSNE  120
AANNNEEQTN SKAGEEEEEQ DQDKTKKQLK PKKKNQKRQR EPRFAFMTKS DVDHLDDGYR  180
WRKYGQKAVK NSPHPRSYYR CTTAGCGVKK RVERSSEDPT IVVTTYEGQH THPSPITPRG  240
NLGIFPTDHS TAFATASPFV VPQPQYLQQQ QQPYIYTASP SLNLTSGTSA APSFINPSFS  300
SFIHDQERRM APRSSPSSLL RDHGLLQDIV PSQMRNEPKE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271682351077Probable WRKY transcription factor 4
2lex_A2e-271682351077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035842.21e-131PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ45e-71WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A061EQ421e-130A0A061EQ42_THECC; WRKY DNA-binding protein 48, putative isoform 1
STRINGEOY067681e-131(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]