PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4234_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 270aa    MW: 29833.1 Da    PI: 8.215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4234_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002292114123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  Neem_4234_f_2  92 FSCNYCQRKFYSSQALGGHQNAH 114
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-688119No hitNo description
PROSITE profilePS5015711.42792119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEPPKSEPSF SETSSIISVS NAPPPCLNSS PTEGKQNDLL LDLSLSNKDS NRGSKPELNL  60
IDCFNVNTNS SEDSLENNTD HLQGNETEPR VFSCNYCQRK FYSSQALGGH QNAHKRERTL  120
AKRGQKMSAA SPLAVGHHLP NTYPNRYPSM ASLPLHGSYN RSLGIQVHSM IHKPSFVTST  180
INSSYIYDQN GWPRQPIDRQ PAIGRLSQEN LTANYAAGSS SGNGVGRFES VRKFSAVNEA  240
NINGGYWWDS VCPFKTKQDD LQKLDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465202.11e-139zinc finger protein 1
TrEMBLA0A067DJC51e-137A0A067DJC5_CITSI; Uncharacterized protein
TrEMBLA0A2H5PL371e-137A0A2H5PL37_CITUN; Uncharacterized protein
STRINGXP_006465202.11e-138(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-42zinc-finger protein 1