PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4215_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 211aa    MW: 23333.5 Da    PI: 7.6976
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4215_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.71.2e-301190179
         DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79
                   +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvy   ++
  Neem_4215_f_2 11 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYVPSKF 90
                   7*************************99**********************************************976543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.91910115IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-291189IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MASSGTGTGS PCGACKFLRR KCASDCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLLHV  60
PVADRCEAVV TIAYEAQARI RDPVYVPSKF PYYGLLPENI VACLQAQLMQ VKAQLAQNMM  120
DSRNIENHQW TGNTSGVASF PTTYNPAYMN PISPQSSLES ADHNTDGMNM QEIDSCRDEF  180
SFQAYPNNKI KRPYNTDLGE LQALALRMMR N
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443871.11e-115hypothetical protein CICLE_v10024416mg
RefseqXP_006479561.11e-115PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB77e-68LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A067FM801e-115A0A067FM80_CITSI; Uncharacterized protein
TrEMBLV4U4K11e-115V4U4K1_9R
STRINGPOPTR_0005s24320.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.14e-69lateral organ boundaries-domain 16