PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_41645_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 613aa    MW: 64370.1 Da    PI: 8.4527
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_41645_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-067797323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C +C++s++++ +L++H++tH
  Neem_41645_f_1 77 CAYCNESCKSRTELENHMKTH 97
                    ********************9 PP

2zf-C2H213.40.00024343365123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+ +F+    L+ H+  H
  Neem_41645_f_1 343 FTCYICSAVFTAARGLQAHMLEH 365
                     89******************998 PP

3zf-C2H211.20.0012488510223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C +Cgk  s+   L +H+r+ H
  Neem_41645_f_1 488 RCLICGKEMSSVRALASHLRSsH 510
                     6*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355373155IPR015880Zinc finger, C2H2-like
SMARTSM003550.00877597IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7677598IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-576129No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM003550.032107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SMARTSM003551.9136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
PfamPF128740.019138156No hitNo description
SMARTSM003559.9255278IPR015880Zinc finger, C2H2-like
SMARTSM003550.061282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6282304IPR007087Zinc finger, C2H2
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SMARTSM003552.6313335IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280315335IPR007087Zinc finger, C2H2
SMARTSM003550.11343365IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.39E-7343394No hitNo description
PROSITE patternPS000280345365IPR007087Zinc finger, C2H2
SMARTSM003553.8372395IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037372402IPR007087Zinc finger, C2H2
PROSITE patternPS000280374395IPR007087Zinc finger, C2H2
SMARTSM003550.44487510IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280489510IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
KATSKQTNGP KTNGDAAGGA DALLNNNQAG ASCDICERGD FASEAELAAH RKLAHHKEAT  60
SQAKNGPTST CPVSLLCAYC NESCKSRTEL ENHMKTHSSV GHATGKHKCN ICDELCPSAG  120
VLAEHKLTHC KVVQGSACTV CRASVTTEEQ FRTHLRQHSG GGNPPASAPL CLPVQCVICR  180
QTLVSEVESG EPSSMVPTSS APLPGQAVSY VCADCYRRHT KLSSRSPPST PLALSSPSRQ  240
DDAGPESSSD KDLTPRCGEC GLKAESAAAL EAHIAAAHKN TYQCIKCQAS FESERDIRLH  300
VSAHLLAEGA AANECRLCRR QLSTPLQLQL HLIEHTFAGC ASFTCYICSA VFTAARGLQA  360
HMLEHGLSAR PYDCSHCGLR FFFRAELDNH TLGHHAHALA QALPALPTVL PGDDEEAVAA  420
AAAAQASFYQ HLSNTLGSNG LDLHYYTVPA GEAGVKSPRK SSVRSNGSNG RERDREGSRT  480
PLAATKPRCL ICGKEMSSVR ALASHLRSSH GLPAVQRGAA GPGCPAASPG RAAPGPRRLQ  540
PPAPHRGGRE AGAVCPASQG RGGRRGGLGR REPPYPSCHT NFGFVAGTGN GVGASVGGRD  600
RQSDRGTGRK TRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6H6171e-128A0A1B6H617_9HEMI; Uncharacterized protein (Fragment)
TrEMBLA0A1B6JWE61e-129A0A1B6JWE6_9HEMI; Uncharacterized protein (Fragment)
TrEMBLA0A2P8Y5G31e-124A0A2P8Y5G3_BLAGE; Zinc finger protein 521
STRINGKDR094211e-118(Zootermopsis nevadensis)