PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4148_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 460aa    MW: 49744.5 Da    PI: 5.0703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4148_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31241299259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Neem_4148_f_2 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 299
                    699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-31234301IPR003657WRKY domain
PROSITE profilePS5081133.109235301IPR003657WRKY domain
SuperFamilySSF1182903.01E-26238301IPR003657WRKY domain
SMARTSM007741.4E-37240300IPR003657WRKY domain
PfamPF031069.9E-26242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MENYQGDLTD IVRASAGQVG CNSNSASAAA SDVNNPSPNW QFPSSDPLNF ASSIHDDQRD  60
SFFGDPFCNM RDPLLHEFNM SGSTYYNPPN SADILRTSVD EVAGNSFCGG NASSILRHQR  120
VFDDDLKSPC NIFSRIQISS SQSPKLQQSQ PPLSPCDSPV MAAATAAAAS PRGIKTPAMV  180
ASDMINANSS KSCLVDNSGP VQISSPRNLG IKRRKSQAKK VVCIPAPAAA NSRSSGEVVP  240
SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW  300
PTQRNALAGS TRSQPSKNNA ASKSSPSSQP QNTTNNAKEE GKESSNDTMS SPTTIVGPSS  360
SASVKEEIED IDKSIEMEDA EFSEGFSQIY KPALPDSNQS EDFFADLGEI EADPLNLLFS  420
QEFSADHEQK ESKGLDPFSI FDWSGDNNSN SSFGETKRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25215302280Disease resistance protein RRS1
5w3x_D5e-25215302280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853012e-43KC485301.1 Jatropha curcas WRKY transcription factor 49 (WRKY49) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021637737.10.0probable WRKY transcription factor 14
TrEMBLA0A2H5N2M90.0A0A2H5N2M9_CITUN; Uncharacterized protein
STRINGcassava4.1_030132m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.14e-94WRKY DNA-binding protein 14