PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_413_f_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 514aa    MW: 57140.4 Da    PI: 5.6878
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_413_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081355377123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+Cp C+k+F  +  L  H  +H
  Neem_413_f_5 355 YSCPLCNKTFDKHQALGGHVASH 377
                   99*********999999998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.62179106IPR007087Zinc finger, C2H2
SMARTSM003551607999IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-78099IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-7130152No hitNo description
PfamPF139129.3E-4130154IPR007087Zinc finger, C2H2
SMARTSM003553.8130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576673.3E-5353383No hitNo description
PROSITE profilePS5015711.011355382IPR007087Zinc finger, C2H2
PfamPF139121.3E-5355378IPR007087Zinc finger, C2H2
SMARTSM003550.02355377IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280357377IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-7433460No hitNo description
PROSITE profilePS501579.64438460IPR007087Zinc finger, C2H2
PfamPF139123.1E-13438461IPR007087Zinc finger, C2H2
SMARTSM003550.026438460IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280440460IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MAQAQEQTHF PSLAADKVAA AAFQAASEDL IKEENQPVFE ADDLVDSDTH ASLSLKLKIP  60
RPDVIVEDLQ RHPLSDVLRT CDECGKQFIS GKALGGHKRA CLQKKNIQKQ KVKNVVSVKL  120
DGDQTSAGLH MCYVCHQNFR SLKSLYGHMR KHPDREWRGI QPPPQHENLC ISSTVSDYDD  180
QDHGEDVYHR DDEDRGVDYC SDNSAVDLVD TLKGWSVKAK RGQRLSEVEA MQQAVHDLML  240
LAQFRTKDRT VTSKKRGFDQ VSSVGSGYGL LKLKENRPET EDIGKRIEVE DGLHYEETKN  300
MTCNSEDTWI LKDYEDESEM EIIDEMKQQK KKRRLNELDD LDSVKEEPIT TIQTYSCPLC  360
NKTFDKHQAL GGHVASHNKN KSLMNTAKES SAASASASTA DDRNSNLNID SKATEKDKQP  420
EETGDSSRVA AAAAGTDHQC NICNKSFPTG QALGGHKRCH WTGPAEAFSS SSQVTTSAGE  480
VTQTAPRVVL DFDLNDRPPE YYQFHGVEAT AAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329333KKKRR
2329334KKKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452771.11e-126transcriptional regulator ATRX homolog
TrEMBLV4UTT61e-125V4UTT6_9ROSI; Uncharacterized protein
STRINGXP_006452771.11e-126(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-21C2H2 family protein